reorganized code into separate files

@miSim/miSim.m

@@ -0,0 +1,44 @@
+classdef miSim
+    % multiagent interconnection simulation
+
+    % Simulation parameters
+    properties (SetAccess = private, GetAccess = public)
+        timestep = NaN; % delta time interval for simulation iterations
+        partitioningFreq = NaN; % number of simulation timesteps at which the partitioning routine is re-run
+        maxIter = NaN; % maximum number of simulation iterations
+        domain = rectangularPrism;
+        objective = sensingObjective;
+        obstacles = cell(0, 1); % geometries that define obstacles within the domain
+        agents = cell(0, 1); % agents that move within the domain
+        adjacency = NaN; % Adjacency matrix representing communications network graph
+        partitioning = NaN;
+    end
+
+    properties (Access = private)
+        % Plot objects
+        connectionsPlot; % objects for lines connecting agents in spatial plots
+        graphPlot; % objects for abstract network graph plot
+        partitionPlot; % objects for partition plot
+
+        % Indicies for various plot types in the main tiled layout figure
+        spatialPlotIndices = [6, 4, 3, 2];
+        objectivePlotIndices = [6, 4];
+        networkGraphIndex = 5;
+        partitionGraphIndex = 1;
+    end
+
+    methods (Access = public)
+        [obj, f] = initialize(obj, domain, objective, agents, timestep, partitoningFreq, maxIter, obstacles);
+        [obj, f] = run(obj, f);
+        [obj]    = partition(obj);
+        [obj]    = updateAdjacency(obj);
+        [obj, f] = plot(obj);
+        [obj, f] = plotConnections(obj, ind, f);
+        [obj, f] = plotPartitions(obj, ind, f);
+        [obj, f] = plotGraph(obj, ind, f);
+        [obj, f] = updatePlots(obj, f, updatePartitions);
+    end
+    methods (Access = private)
+        [v] = setupVideoWriter(obj);
+    end
+end